WABI 2014 Accepted Papers

• Chen Gu, Leonidas Guibas and Michael Kerber
  Topology-driven Trajectory Synthesis with an Example on Retinal Cell Motions
• Dominik Kopczynski and Sven Rahmann
  An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data
• Matteo Comin, Andrea Leoni and Michele Schimd
  QCluster: Extending Alignment-free Measures with Quality Values for Reads Clustering
• Nicolas Boria, Adam Kurpisz, Samuli Leppänen and Monaldo Mastrolilli
  Improved Approximation for the Maximum Duo-Preservation String Mapping Problem
• Kerstin Scheubert, Franziska Hufsky and Sebastian Böcker
  Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting Performance and Quality
• Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot and Vincent Lacroix
  Navigating in a sea of repeats in RNA-seq without drowning
• Sharon Bruckner, Falk Hüffner and Christian Komusiewicz
  A Graph Modification Approach for Finding Core--Periphery Structures in Protein Interaction Networks
• Fábio Henrique Viduani Martinez, Pedro Feijão, Marília Braga and Jens Stoye
  On the family-free DCJ distance
• Niina Haiminen, Claude Lebreton and Laxmi Parida
  Best-Fit in Linear Time for Non-generative Population Simulation
• Luis Cunha, Luis Kowada, Rodrigo Hausen and Celina Figueiredo
  A Faster 1.375-Approximation Algorithm for Sorting by Transpositions
• Martin Muggli, Simon J. Puglisi and Christina Boucher
  Efficient Indexed Alignment of Contigs to Optical Maps
• Phillip Compeau
  A Generalized Cost Model for DCJ-Indel Sorting
• Eugene Myers
  Efficient Alignment Discovery amongst Noisy Long Reads
• Constantinos Tsirogiannis, Brody Sandel and Adrija Kalvisa
  New Algorithms for Computing Phylogenetic Biodiversity
• Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali and Raffaella Rizzi
  Constructing String Graphs in External Memory
• Sagi Snir
  Pacemaker Partition Identification
• Shuai Jiang and Max Alekseyev
  Linearization of Median Genomes under DCJ
• Vladimír Boža, Broňa Brejová and Tomas Vinar
  GAML: Genome Assembly by Maximum Likelihood
• Sebastian Will and Peter F. Stadler
  A Common Framework for Linear and Cyclic Multiple Sequence Alignment Problem
• Yu-Ting Huang and Marek Chrobak
  An LP-Rounding Algorithm for Degenerate Primer Design
• Laxmi Parida, Cinzia Pizzi and Simona E. Rombo
  Entropic profiles, maximal motifs and the discovery of significant repetitions in genomic sequences
• Eiwen Yang and Tao Jiang
  GDNorm: An Improved Poisson Regression Model for Reducing Biases in Hi-C Data
• Yu Lin and Pavel Pevzner
  Manifold de Bruijn graphs
• Iman Hajirasouliha and Benjamin Raphael
  Reconstructing mutational history in multiply sampled tumors using perfect phylogeny mixtures
• Adrin Jalali and Nico Pfeifer
  Interpretable per Case Weighted Ensemble Method for Cancer Associations
• Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege and Chris-Andre Leimeister
  Estimating evolutionary distances from spaced-word matches
• Tomas Flouri, Alexandros Stamatakis, Kassian Kobert and Andre Aberer
  The divisible load balance problem and its application to phylogenetic inference