WABI 2014
September 8–10, Wrocław, Poland

WABI 2014 Accepted Papers

  • Chen Gu, Leonidas Guibas and Michael Kerber
    Topology-driven Trajectory Synthesis with an Example on Retinal Cell Motions
  • Dominik Kopczynski and Sven Rahmann
    An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data
  • Matteo Comin, Andrea Leoni and Michele Schimd
    QCluster: Extending Alignment-free Measures with Quality Values for Reads Clustering
  • Nicolas Boria, Adam Kurpisz, Samuli Leppänen and Monaldo Mastrolilli
    Improved Approximation for the Maximum Duo-Preservation String Mapping Problem
  • Kerstin Scheubert, Franziska Hufsky and Sebastian Böcker
    Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting Performance and Quality
  • Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot and Vincent Lacroix
    Navigating in a sea of repeats in RNA-seq without drowning
  • Sharon Bruckner, Falk Hüffner and Christian Komusiewicz
    A Graph Modification Approach for Finding Core--Periphery Structures in Protein Interaction Networks
  • Fábio Henrique Viduani Martinez, Pedro Feijão, Marília Braga and Jens Stoye
    On the family-free DCJ distance
  • Niina Haiminen, Claude Lebreton and Laxmi Parida
    Best-Fit in Linear Time for Non-generative Population Simulation
  • Luis Cunha, Luis Kowada, Rodrigo Hausen and Celina Figueiredo
    A Faster 1.375-Approximation Algorithm for Sorting by Transpositions
  • Martin Muggli, Simon J. Puglisi and Christina Boucher
    Efficient Indexed Alignment of Contigs to Optical Maps
  • Phillip Compeau
    A Generalized Cost Model for DCJ-Indel Sorting
  • Eugene Myers
    Efficient Alignment Discovery amongst Noisy Long Reads
  • Constantinos Tsirogiannis, Brody Sandel and Adrija Kalvisa
    New Algorithms for Computing Phylogenetic Biodiversity
  • Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali and Raffaella Rizzi
    Constructing String Graphs in External Memory
  • Sagi Snir
    Pacemaker Partition Identification
  • Shuai Jiang and Max Alekseyev
    Linearization of Median Genomes under DCJ
  • Vladimír Boža, Broňa Brejová and Tomas Vinar
    GAML: Genome Assembly by Maximum Likelihood
  • Sebastian Will and Peter F. Stadler
    A Common Framework for Linear and Cyclic Multiple Sequence Alignment Problem
  • Yu-Ting Huang and Marek Chrobak
    An LP-Rounding Algorithm for Degenerate Primer Design
  • Laxmi Parida, Cinzia Pizzi and Simona E. Rombo
    Entropic profiles, maximal motifs and the discovery of significant repetitions in genomic sequences
  • Eiwen Yang and Tao Jiang
    GDNorm: An Improved Poisson Regression Model for Reducing Biases in Hi-C Data
  • Yu Lin and Pavel Pevzner
    Manifold de Bruijn graphs
  • Iman Hajirasouliha and Benjamin Raphael
    Reconstructing mutational history in multiply sampled tumors using perfect phylogeny mixtures
  • Adrin Jalali and Nico Pfeifer
    Interpretable per Case Weighted Ensemble Method for Cancer Associations
  • Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege and Chris-Andre Leimeister
    Estimating evolutionary distances from spaced-word matches
  • Tomas Flouri, Alexandros Stamatakis, Kassian Kobert and Andre Aberer
    The divisible load balance problem and its application to phylogenetic inference